• Version:
  • 11.0 [archived version]
STRINGSTRING
ERCC6L2 ERCC6L2 DDX51 DDX51 OR2T5 OR2T5 RBM15B RBM15B ENSG00000260537 ENSG00000260537 NXF1 NXF1 NUP214 NUP214 UBALD1 UBALD1 GLE1 GLE1 NXF5 NXF5 TMEM194A TMEM194A
"ENSG00000260537" - ATP-dependent RNA helicase DDX19B in Homo sapiens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSG00000260537ATP-dependent RNA helicase DDX19B (261 aa)    
Predicted Functional Partners:
GLE1
Nucleoporin GLE1; Required for the export of mRNAs containing poly(A) tails from the nucleus into the cytoplasm. May be involved in the terminal step of the mRNA transport through the nuclear pore complex (NPC); Belongs to the GLE1 family (698 aa)
     
 
  0.840
NUP214
Nuclear pore complex protein Nup214; May serve as a docking site in the receptor-mediated import of substrates across the nuclear pore complex; Nucleoporins (2090 aa)
     
 
  0.732
NXF1
Nuclear RNA export factor 1; Involved in the nuclear export of mRNA species bearing retroviral constitutive transport elements (CTE) and in the export of mRNA from the nucleus to the cytoplasm (TAP/NFX1 pathway). The NXF1-NXT1 heterodimer is involved in the export of HSP70 mRNA in conjunction with ALYREF/THOC4 and THOC5 components of the TREX complex. ALYREF/THOC4-bound mRNA is thought to be transferred to the NXF1-NXT1 heterodimer for export (619 aa)
     
 
  0.709
UBALD1
UBA-like domain-containing protein 1; UBA like domain containing 1 (177 aa)
           
  0.585
OR2T5
Olfactory receptor 2T5; Odorant receptor; Olfactory receptors, family 2 (315 aa)
           
  0.573
ERCC6L2
DNA excision repair protein ERCC-6-like 2; May be involved in early DNA damage response (712 aa)
     
 
  0.540
NXF5
Nuclear RNA export factor 5; Could be involved in the export of mRNA from the nucleus to the cytoplasm. Could also have a role in polarized cytoplasmic transport and localization of mRNA in neurons (365 aa)
     
 
  0.537
TMEM194A
Transmembrane protein 194A (444 aa)
           
  0.522
DDX51
ATP-dependent RNA helicase DDX51; ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits; Belongs to the DEAD box helicase family. DDX51/DBP6 subfamily (666 aa)
   
 
  0.512
RBM15B
Putative RNA-binding protein 15B; May function in the regulation of alternative or illicit splicing; Belongs to the RRM Spen family (890 aa)
           
  0.512
Your Current Organism:
Homo sapiens
NCBI taxonomy Id: 9606
Other names: H. sapiens, Homo sapiens, human, man
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