• Version:
  • 11.0 [archived version]
STRINGSTRING
BCAT1 BCAT1 GARNL3 GARNL3 LYRM5 LYRM5 LRMP LRMP GAPT GAPT CASC1 CASC1 LMNTD1 LMNTD1 ACTRT1 ACTRT1 FAM114A2 FAM114A2 IGBP1 IGBP1 DCAF16 DCAF16
"LMNTD1" - Lamin tail domain containing 1 in Homo sapiens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMNTD1Lamin tail domain containing 1 (409 aa)    
Predicted Functional Partners:
CASC1
Protein phosphatase 1 regulatory subunits (722 aa)
           
  0.684
FAM114A2
Protein FAM114A2; Family with sequence similarity 114 member A2; Belongs to the FAM114 family (505 aa)
           
  0.673
LRMP
Lymphoid-restricted membrane protein; Plays a role in the delivery of peptides to major histocompatibility complex (MHC) class I molecules; this occurs in a transporter associated with antigen processing (TAP)-independent manner. May play a role in taste signal transduction via ITPR3. May play a role during fertilization in pronucleus congression and fusion (499 aa)
           
  0.672
GARNL3
GTPase-activating Rap/Ran-GAP domain-like protein 3; GTPase activating Rap/RanGAP domain like 3 (1013 aa)
           
  0.645
IGBP1
Immunoglobulin-binding protein 1; Associated to surface IgM-receptor; may be involved in signal transduction. Involved in regulation of the catalytic activity of the phosphatases PP2A, PP4 and PP6 by protecting their partially folded catalytic subunits from degradative polyubiquitination until they associate with regulatory subunits (339 aa)
     
   
  0.588
LYRM5
Electron transfer flavoprotein regulatory factor 1; Acts as a regulator of the electron transfer flavoprotein by promoting the removal of flavin from the ETF holoenzyme (composed of ETFA and ETFB) (90 aa)
           
  0.577
DCAF16
DDB1- and CUL4-associated factor 16; May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex; DDB1 and CUL4 associated factors (216 aa)
           
  0.561
ACTRT1
Actin related protein T1 (376 aa)
     
   
  0.543
BCAT1
Branched-chain-amino-acid aminotransferase, cytosolic; Catalyzes the first reaction in the catabolism of the essential branched chain amino acids leucine, isoleucine, and valine (398 aa)
           
  0.542
GAPT
Protein GAPT; Negatively regulates B-cell proliferation following stimulation through the B-cell receptor. May play an important role in maintenance of marginal zone (MZ) B-cells (By similarity); Belongs to the GAPT family (157 aa)
           
  0.541
Your Current Organism:
Homo sapiens
NCBI taxonomy Id: 9606
Other names: H. sapiens, Homo sapiens, human, man
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