• Version:
  • 11.0 [archived version]
STRINGSTRING
NYNRIN NYNRIN PCDH7 PCDH7 ZNF396 ZNF396 ZBED9 ZBED9 UBA52 UBA52 ZSCAN20 ZSCAN20 ZKSCAN4 ZKSCAN4 ZSCAN32 ZSCAN32 ZNF232 ZNF232 ZNF397 ZNF397 ZNF444 ZNF444
"ZBED9" - SCAN domain-containing protein 3 in Homo sapiens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
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[Homology]
Score
ZBED9SCAN domain-containing protein 3; Zinc finger BED-type containing 9; SCAN domain containing (1325 aa)    
Predicted Functional Partners:
ZKSCAN4
Zinc finger protein with KRAB and SCAN domains 4; May be involved in the transcriptional activation of MDM2 and EP300 genes; Belongs to the krueppel C2H2-type zinc-finger protein family (545 aa)
     
   
0.878
ZNF396
Zinc finger protein 396; Isoform 1 and isoform 2 act as DNA-dependent transcriptional repressors; Belongs to the krueppel C2H2-type zinc-finger protein family (333 aa)
     
   
0.834
ZSCAN32
Zinc finger and SCAN domain-containing protein 32; May be involved in transcriptional regulation; Belongs to the krueppel C2H2-type zinc-finger protein family (697 aa)
     
   
0.815
ZSCAN20
Zinc finger and SCAN domain-containing protein 20; May be involved in transcriptional regulation; Myb/SANT domain containing (1043 aa)
     
   
0.740
ZNF444
Zinc finger protein 444; Transcriptional regulator. Binds to the 5’-flanking critical region of the SCARF1 promoter; Belongs to the krueppel C2H2-type zinc-finger protein family (327 aa)
     
   
0.702
ZNF232
Zinc finger protein 232; May be involved in transcriptional regulation; SCAN domain containing (444 aa)
     
   
0.699
ZNF397
Zinc finger protein 397; Isoform 3 acts as a DNA-dependent transcriptional repressor; SCAN domain containing (534 aa)
     
   
0.689
UBA52
Ubiquitin-60S ribosomal protein L40; Ubiquitin- Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked- Lys-6-linked may be invo [...] (128 aa)
       
      0.548
PCDH7
Protocadherin-7; Protein phosphatase 1 regulatory subunits; Non-clustered protocadherins (1072 aa)
       
 
  0.524
NYNRIN
Protein NYNRIN; NYN domain and retroviral integrase containing (1898 aa)
     
 
  0.497
Your Current Organism:
Homo sapiens
NCBI taxonomy Id: 9606
Other names: H. sapiens, Homo sapiens, human, man
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