• Version:
  • 11.0 [archived version]
STRINGSTRING
OR2T8 OR2T8 RXRB RXRB CPAMD8 CPAMD8 FAM46C FAM46C TRIM58 TRIM58 ENSG00000274792 ENSG00000274792 GPATCH4 GPATCH4 ENSG00000183706 ENSG00000183706 NPTX2 NPTX2 UBQLN3 UBQLN3 OR2W3 OR2W3
"TRIM58" - E3 ubiquitin-protein ligase TRIM58 in Homo sapiens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM58E3 ubiquitin-protein ligase TRIM58; E3 ubiquitin ligase induced during late erythropoiesis. Directly binds and ubiquitinates the intermediate chain of the microtubule motor dynein (DYNC1LI1/DYNC1LI2), stimulating the degradation of the dynein holoprotein complex. May participate in the erythroblast enucleation process through regulation of nuclear polarization; Ring finger proteins (486 aa)    
Predicted Functional Partners:
CPAMD8
C3 and PZP like, alpha-2-macroglobulin domain containing 8; Belongs to the protease inhibitor I39 (alpha-2- macroglobulin) family (1932 aa)
           
  0.703
OR2W3
Olfactory receptor 2W3; Odorant receptor; Olfactory receptors, family 2 (314 aa)
     
   
  0.696
GPATCH4
G-patch domain containing 4 (375 aa)
           
  0.558
UBQLN3
Ubiquilin-3; Ubiquilin family (655 aa)
       
 
  0.550
OR2T8
Olfactory receptor 2T8; Odorant receptor; Olfactory receptors, family 2 (312 aa)
     
   
  0.542
FAM46C
Putative nucleotidyltransferase FAM46C; Probable nucleotidyltransferase that may act as a non- canonical poly(A) RNA polymerase; Belongs to the FAM46 family (391 aa)
     
   
  0.536
ENSG00000274792
Olfactory receptor; Odorant receptor; Olfactory receptors, family 4 (316 aa)
           
  0.531
ENSG00000183706
Olfactory receptor 4N4; Odorant receptor; Olfactory receptors, family 4 (316 aa)
           
  0.531
RXRB
Retinoic acid receptor RXR-beta; Receptor for retinoic acid. Retinoic acid receptors bind as heterodimers to their target response elements in response to their ligands, all-trans or 9-cis retinoic acid, and regulate gene expression in various biological processes. The RAR/RXR heterodimers bind to the retinoic acid response elements (RARE); Nuclear hormone receptors (537 aa)
       
 
  0.522
NPTX2
Neuronal pentraxin-2; Likely to play role in the modification of cellular properties that underlie long-term plasticity. Binds to agar matrix in a calcium-dependent manner (By similarity) (431 aa)
           
  0.499
Your Current Organism:
Homo sapiens
NCBI taxonomy Id: 9606
Other names: H. sapiens, Homo sapiens, human, man
Server load: low (1%) [HD]