• Version:
  • 11.0 [archived version]
STRINGSTRING
RFPL3S RFPL3S NARS NARS FAM187B FAM187B PAX6 PAX6 RFPL3 RFPL3 RFPL1 RFPL1 GDF9 GDF9 PRAMEF12 PRAMEF12 ZSCAN4 ZSCAN4 RASL10A RASL10A NEFH NEFH
"RFPL1" - Ret finger protein like 1 in Homo sapiens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
RFPL1Ret finger protein like 1; Ring finger proteins (317 aa)    
Predicted Functional Partners:
RFPL3S
Putative protein RFPL3S; RFPL3 antisense (107 aa)
     
   
  0.906
NARS
Asparagine--tRNA ligase, cytoplasmic; Aminoacyl tRNA synthetases, Class II (548 aa)
           
  0.756
RFPL3
Ret finger protein-like 3; (Microbial infection) Stimulates the activity of Human Immunodeficiency Virus 1/HIV-1 pre-integration complex; Ring finger proteins (317 aa)
       
 
0.693
NEFH
Neurofilament heavy polypeptide; Neurofilaments usually contain three intermediate filament proteins- L, M, and H which are involved in the maintenance of neuronal caliber. NF-H has an important function in mature axons that is not subserved by the two smaller NF proteins (1020 aa)
     
 
  0.626
PAX6
Paired box protein Pax-6; Transcription factor with important functions in the development of the eye, nose, central nervous system and pancreas. Required for the differentiation of pancreatic islet alpha cells (By similarity). Competes with PAX4 in binding to a common element in the glucagon, insulin and somatostatin promoters. Regulates specification of the ventral neuron subtypes by establishing the correct progenitor domains (By similarity). Isoform 5a appears to function as a molecular switch that specifies target genes; Belongs to the paired homeobox family (436 aa)
     
 
  0.594
FAM187B
Protein FAM187B; Family with sequence similarity 187 member B (369 aa)
           
  0.586
GDF9
Growth/differentiation factor 9; Required for ovarian folliculogenesis. Promotes primordial follicle development. Stimulates granulosa cell proliferation. Promotes cell transition from G0/G1 to S and G2/M phases, through an increase of CCND1 and CCNE1 expression, and RB1 phosphorylation. It regulates STAR expression and cAMP-dependent progesterone release in granulosa and thecal cells. Attenuates the suppressive effects of activin A on STAR expression and progesterone production by increasing the expression of inhibin B. It suppresses FST and FSTL3 production in granulosa-lutein cells; [...] (454 aa)
     
   
  0.582
PRAMEF12
PRAME family member 12; Belongs to the PRAME family (483 aa)
           
  0.561
RASL10A
Ras-like protein family member 10A; Potent inhibitor of cellular proliferation; RAS type GTPase family (203 aa)
     
 
  0.558
ZSCAN4
Zinc finger and SCAN domain-containing protein 4; Embryonic stem (ES) cell-specific transcription factor required to regulate ES cell pluripotency. Binds telomeres and plays a key role in genomic stability in ES cells by regulating telomere elongation. Acts as an activator of spontaneous telomere sister chromatid exchange (T-SCE) and telomere elongation in undifferentiated ES cells (By similarity); SCAN domain containing (433 aa)
     
 
  0.555
Your Current Organism:
Homo sapiens
NCBI taxonomy Id: 9606
Other names: H. sapiens, Homo sapiens, human, man
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