• Version:
  • 11.0 [archived version]
STRINGSTRING
GABRA2 GABRA2 RGAG4 RGAG4 ZCCHC3 ZCCHC3 ZNF280D ZNF280D RGAG1 RGAG1 FAM195A FAM195A FAM127A FAM127A ZCCHC16 ZCCHC16 C11orf80 C11orf80 CCDC36 CCDC36 SEZ6L SEZ6L
"FAM127A" - Retrotransposon Gag-like protein 8B in Homo sapiens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
Experiments
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[Homology]
Score
FAM127ARetrotransposon Gag-like protein 8B; Family with sequence similarity 127, member A; Belongs to the FAM127 family (113 aa)    
Predicted Functional Partners:
RGAG1
Retrotransposon Gag-like protein 9; Retrotransposon gag domain containing 1 (1388 aa)
     
   
  0.780
RGAG4
Retrotransposon Gag-like protein 5; Retrotransposon gag domain containing 4 (569 aa)
     
   
  0.737
ZCCHC16
Retrotransposon Gag-like protein 4; Involved in cognitive function in the brain, possibly via the noradrenergic system (310 aa)
           
  0.645
FAM195A
MAPK regulated corepressor interacting protein 2; Family with sequence similarity 195, member A (160 aa)
           
  0.569
ZCCHC3
Zinc finger CCHC-type containing 3 (403 aa)
           
  0.550
ZNF280D
Zinc finger protein 280D; May function as a transcription factor (979 aa)
           
  0.473
GABRA2
Gamma-aminobutyric acid receptor subunit alpha-2; GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel; Gamma-aminobutyric acid type A receptor subunits (451 aa)
           
  0.466
C11orf80
Type 2 DNA topoisomerase 6 subunit B-like; Isoform 3- Component of a topoisomerase 6 complex specifically required for meiotic recombination. Together with SPO11, mediates DNA cleavage that forms the double-strand breaks (DSB) that initiate meiotic recombination. The complex promotes relaxation of negative and positive supercoiled DNA and DNA decatenation through cleavage and ligation cycles (572 aa)
           
  0.451
CCDC36
Interactor of HORMAD1 protein 1; Required for DNA double-strand breaks (DSBs) formation in unsynapsed regions during meiotic recombination. Probably acts by forming a complex with MEI4 and REC114, which activates DSBs formation in unsynapsed regions, an essential step to ensure completion of synapsis. Not required for HORMAD1 functions in pairing-independent synaptonemal complex formation, ATR recruitment to unsynapsed axes, meiotic silencing of unsynapsed chromatin (MSUC) or meiotic surveillance (594 aa)
           
  0.445
SEZ6L
Seizure 6-like protein; May contribute to specialized endoplasmic reticulum functions in neurons; Sushi domain containing (1024 aa)
           
  0.443
Your Current Organism:
Homo sapiens
NCBI taxonomy Id: 9606
Other names: H. sapiens, Homo sapiens, human, man
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